PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen07g001380.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 445aa    MW: 46418.2 Da    PI: 6.7258
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen07g001380.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH376.1e-12268313555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Sopen07g001380.1 268 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 313
                       99***********************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.37E-17261323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.10E-13261317No hitNo description
PROSITE profilePS5088817.39263312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-16265322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-9268313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13269318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MQAMNSLLSQ QQQSQISLQD LQNGGNGGST GGVGGLSQHS MGHSHFDPTS SHDDFLEQIL  60
SSVPSSSPWP DLSKSWDPHH HLSSPPHNPS SGEDQPPSNP FHSQFHYDDQ ASSLLASKLR  120
QHQITSGGGA AAAAKALMLQ QQLLLSRTLA GNGLRSPNGA SGDNGLLSLP LNLSNGDQND  180
SVANPTNDNS VQALFNGFTG SLGQTSNQPQ HFHHPQGGSM QSQSFGAPAM NQTPAASGSA  240
GGGGGSTPAA QPKQQRVRAR RGQATDPHSI AERLRRERIA ERMKALQELV PNANKTDKAS  300
MLDEIIDYVK FLQLQVKVLS MSRLGGAAAV APLVADMSSE GRGEGNVGRG GNGRASSSNN  360
ETMTVTEHQV AKLMEEDMGS AMQYLQGKGL CLMPISLATA ISTSTRISNN PLLAPEAGGS  420
TSPTLSALTV QSATAGKDAT SISET
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1272277RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015080472.10.0PREDICTED: transcription factor bHLH82
SwissprotQ9ZUG92e-85BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A0V0I6Q30.0A0A0V0I6Q3_SOLCH; Putative transcription factor bHLH66-like
STRINGSolyc07g005400.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37592445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.11e-60LJRHL1-like 1